crops.command_line.crops_renumber module

This script will renumber a structure file in agreement with the residue positions in the sequence file corresponding to that structure.

Non-polymer elements are numbered starting right after the final (TER) residue.

WARNING: If the input sequence and the input structure files are not from the same source (e.g. RCSB PDB) a source conflict might occur making the renumbering operation unsuccessful even if the program does not crash.

create_argument_parser()

Create a parser for the command line arguments used in crops-renumber.

main()

Renumber a structure file in agreement with the residue positions in the sequence file corresponding to that structure.

Non-polymer elements are numbered starting right after the final (TER) residue. IMPORTANT: If the input sequence and the input structure files are not from the same source (e.g. RCSB PDB) a source conflict might occur making the renumbering operation unsuccessful even if the program does not crash.